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PELESimulation command
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Contents:

.. toctree::
    :maxdepth: 2

    PELESimulation
    PeleOutput
    PeleParameters
    PeleTasks
    ../RandomGenerator/RandomGenerator
    ../NonBonding/NonBondingAlgorithms
    ../Perturbation/Perturbation
    ../Perturbation/SideChainPerturbation
    ../WaterPerturbation/Waterperturbation
    ../ConformationPerturbation/ConformationPerturbation
    ../ANM/Anm
    ../ANM/EigenvectorsAndEigenvalues
    ../LoopClosure/LoopClosure
    ../SideChainPrediction/SideChainPrediction
    ../Minimization/Minimization
    ../PermanentConstraints/PermanentConstraints
    ../Sensors/Sensors
    ../JumpController/JumpController
    ../InteractionRestrictions/InteractionRestrictions
    ../PELEDynamicChangesInSimulationParameters/ParametersThatCanChange
    ../PELEDynamicChangesInSimulationParameters/PELEDynamicChangesInSimulationParameters
    ../ExitConditions/ExitConditions